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Lentiviral Integration Site Standards


Background

Chimeric antigen receptor T cell (CAR-T) immunotherapy is a personalized treatment method that uses gene modification technology to prepare T lymphocytes expressing chimeric antigen receptors (CAR), which are expanded in vitro and then infused back into the patient's body.

In recent years, with the launch of cell therapy products such as Kymriah, Yescarta and Strimvelis, lentivirus is a key intermediate vector in the process of cell loading CAR. Ensuring the quality and safety of lentivirus-based drugs is a huge challenge. At the end of last year, the FDA announced an investigation into the safety issues of CAR-T therapy - the emergence of T cell cancer risks is believed to be due to the gene delivery vector used - lentiviral vector. On January 31 this year, the "Considerations for the development of Chimeric Antigen Receptor (CAR) T Cell Products" guidance was officially released. It is recommended to determine the release standard of vector copy number (VCN) based on risk assessment. Risk assessment includes experimental data supported by research such as insertion site analysis, clonal advantage, dose, indication, and study population. 

The "Non-clinical Research and Technical Guidelines for Genetically Modified Cell Therapy Products" issued by the Drug Approval Center of the National Medical Products Administration (CDE) also includes "insertion mutation risk assessment" as part of non-clinical safety research, and specifies in detail the assessment points of key risk factors. Therefore, CAR-T therapy needs to assess the potential risks of insertion mutations and carcinogenicity.

        

Introduction

In 2021, my country issued four consecutive guidelines for gene therapy-related products, all of which pointed out that lentiviral integration detection should at least include 1. Integration direction 2. Integration position 3. Absolute number of clones at specific integration position and integration direction.。

In response to this requirement, CB-Gene now launches lentiviral integration site standards.

The lentiviral insertion site was determined based on the NGS (capture probe sequencing) results, and was re-verified by Sanger sequencing and ddPCR to accurately locate the lentiviral insertion site and integration frequency.


Lentiviral integration site detection service

CB-Gene now offers a service for detecting lentiviral integration sites (capture probe sequencing technology). Capture probe sequencing technology mainly performs probe capture on the LTR region, and after PCR, NGS sequencing verification is performed, and combined with bioinformatics analysis methods, the lentiviral insertion site is determined. Subsequently, the Sanger and ddPCR methods were used to verify the NGS (capture probe sequencing) technology. The sites detected by NGS (capture probe sequencing) were detected by both the Sanger and ddPCR methods. 
 

NameDescription
Capture probe sequencing technologyAnalysis of lentiviral integration sites

     The lentivirus insertion site detection service (capture probe sequencing) can help you accurately locate the lentivirus insertion site. The lentivirus integration site standard can not only be applied to a variety of detection methods to help you determine the accuracy of the method, but can also be used to locate the detection limit of the detection method.

Characteristics of lentivirus integration

Lentivirus is currently the mainstream transduction method for CAR-T (about 90% of FDA-approved CAR-T products use LV). Lentivirus integration in cells is semi-random (preferring transcriptionally active regions).

1.Lentivirus recognizes host surface receptors and transports RNA and proteins into cells;

2.Viral RNA is reverse transcribed to form linear double-stranded cDNA (including LTR sequences at both ends)

3.Integrase recognizes LTR, and cDNA is integrated into the host genome;

4.Exogenous genes continue to be expressed as host cells divide.


Application of Lentivirus in CAR-T Cell Therapy

Lentivirus is widely used in cell therapy because of its characteristics:

1.wide infection range, high efficiency, effective infection of dividing and non-dividing cells;

2.strong stability, integration into the genome, long-term stable expression of exogenous genes;

3.low immunogenicity and relatively high safety.

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